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The sun produces different frequencies of light in different parts of its atmosphere. By filtering the light to look at specific frequencies we can therefore look at we can see different parts of the Sun's atmosphere.  
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White light

The full spectrum of visible light. This shows the photosphere, and is the image you see if you view the sun using a pinhole camera.

H-alpha

H-alpha images are taken through a filter centered on a particular frequency of visible red light -- one of the spectral lines of Hydrogen. This light forms in the chromosphere, above the visible photosphere but below the corona.

Extreme Ultraviolet

This frequency of light is also formed in the chromosphere. The particular frequency used here forms high in the chromosphere and in the lower regions of the sun's corona.

X-ray

The X-rays we can see form in the outermost layer of the sun's atmosphere, the solar corona.

Magnetogram

Certain frequencies of light are sensitive to the presence of magnetic fields. If we take a picture of the sun using those frequencies we can calculate the direction and intensity of the magnetic field near the solar surface. In the image used here the colors red and blue are used to indicate magnetic fields pointing toward and away from the solar surface.



 
 

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